PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma29g01200.1
Common NameZOSMA_29G01200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 663aa    MW: 71625.8 Da    PI: 5.2053
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma29g01200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.3e-12496541454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  Zosma29g01200.1 496 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 541
                      799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.5E-5281264IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474595.1E-18491558IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.39492541IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.42E-14495542No hitNo description
PfamPF000104.3E-10496541IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.9E-18496562IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.8E-16498547IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MNVNTWTDDN ASMVDAFLNS SSDIQSFNWG LTPATPQVHQ LIPSQPQLQL QPSSSATTTT  60
ITTNNINNDT RNGSFFNQDS LQQRLQLLID GSMESWTYAI FWQSSFEPVS NTSMLGWGDG  120
YYRGCEDEKK TLAVPGTEEY IAVQAHRKNV LRELNSLISG PSTSGEDSVG DEVTDTEWFF  180
LVSMTQSFVT GIGLPGMAFF TGVPSWVAGT DQLVSTPCER ARHAQVSGMQ TLVCVPVGNG  240
VVELGSTEII FQNSGILNKV RLVFNFDVQD GGGGGGGGGG GVSSGSWMLP PSTPVVCQQR  300
DNDPSSRWIS DPSPSVVKIN NTPATVGLSS ASKTSVVVPY EKENRIGAGT GKEAGGPTQI  360
PQNNDNYFSR ELNLSNFKPE STSEIFNFSD ANRREHSSAS AATAAAFSYQ QPNRSKGSNE  420
EGILSFSSTL VGGRISSSIP DPSSGAGRGA ADSDLSDIDA SVKEVESTPP PPVAVEEKRP  480
KKRGRKPANG RDEPLNHVEA ERQRREKLNQ RFYALRAVVP NVSKMDKASL LGDAISYINE  540
LRSKMQTLEI DNENLQSSLH SVKNKTVNRS SAASNATKSC PGLLDVDVRI VDRDAMIRIQ  600
CSKKNHPAAR LMSALMDLDL EVSYASLSVV KDTMVQQVTI RMNNRILTKE SLTAILISKF  660
AE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-59762674195Transcription factor MYC3
4rqw_B2e-59762674195Transcription factor MYC3
4rs9_A2e-59762674195Transcription factor MYC3
4yz6_A2e-59762674195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1477485KRPKKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002280253.10.0PREDICTED: transcription factor MYC2-like
TrEMBLA0A0K9PBL10.0A0A0K9PBL1_Z
STRINGVIT_02s0012g01320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.11e-138bHLH family protein